Publications

2025

  1. AISTAT
    QuACK: A Multipurpose Queuing Algorithm for Cooperative -Armed Bandits
    Benjamin Howson, Sarah Filippi, and Ciara Pike-Burke
    In International Conference on Artificial Intelligence and Statistics, 2025
  2. AISTAT
    Weighted Sum of Gaussian Process Latent Variable Models
    James Odgers, Ruby Sedgwick, Chrysoula Kappatou, and 2 more authors
    In International Conference on Artificial Intelligence and Statistics, 2025

2024

  1. ICML
    Logistic Variational Bayes Revisited
    Michael Komodromos, Marina Evangelou, and Sarah Filippi
    In ICML, 2024
  2. Nature
    Cardiometabolic and renal phenotypes and transitions in the United States population
    Victor PF Lhoste, Bin Zhou, Anu Mishra, and 6 more authors
    Nature cardiovascular research, 2024
  3. ComBiology
    Genomic attributes of airway commensal bacteria and mucosa
    Leah Cuthbertson, Ulrike Löber, Jonathan S Ish-Horowicz, and 8 more authors
    Communications Biology, 2024
  4. Lancet
    General and abdominal adiposity and hypertension in eight world regions: a pooled analysis of 837 population-based studies with 7.5 million participants
    Bin Zhou, James E Bennett, Aidan P Wickham, and 8 more authors
    The Lancet, 2024

2023

  1. CompStat
    BART-based inference for Poisson processes
    Stamatina Lamprinakou, Mauricio Barahona, Seth Flaxman, and 3 more authors
    Computational Statistics & Data Analysis, 2023
  2. JRSS
    Automated calibration for stability selection in penalised regression and graphical models
    Barbara Bodinier, Sarah Filippi, Therese Haugdahl Nøst, and 2 more authors
    Journal of the Royal Statistical Society Series C: Applied Statistics, 2023
  3. AISTAT
    Delayed feedback in generalised linear bandits revisited
    Benjamin Howson, Ciara Pike-Burke, and Sarah Filippi
    In International Conference on Artificial Intelligence and Statistics, 2023
  4. AIChE
    Probabilistic predictions for partial least squares using bootstrap
    James Odgers, Chrysoula Kappatou, Ruth Misener, and 2 more authors
    AIChE Journal, 2023
  5. AISTAT
    Optimism and delays in episodic reinforcement learning
    Benjamin Howson, Ciara Pike-Burke, and Sarah Filippi
    In International Conference on Artificial Intelligence and Statistics, 2023
  6. Bioinformatics
    Automated calibration of consensus weighted distance-based clustering approaches using sharp
    Barbara Bodinier, Dragana Vuckovic, Sabrina Rodrigues, and 3 more authors
    Bioinformatics, 2023

2022

  1. JCGS
    Bayesian kernel two-sample testing
    Qinyi Zhang, Veit Wild, Sarah Filippi, and 2 more authors
    Journal of Computational and Graphical Statistics, 2022
  2. Bioinformatics
    Variational Bayes for high-dimensional proportional hazards models with applications within gene expression
    Michael Komodromos, Eric O Aboagye, Marina Evangelou, and 2 more authors
    Bioinformatics, 2022

2021

  1. Science
    Age groups that sustain resurging COVID-19 epidemics in the United States
    Mélodie Monod, Alexandra Blenkinsop, Xiaoyue Xi, and 8 more authors
    Science, 2021
  2. Allergy
    Atopic dermatitis or eczema? Consequences of ambiguity in disease name for biomedical literature mining
    Clément Frainay, Yoann Pitarch, Sarah Filippi, and 2 more authors
    Clinical & Experimental Allergy, 2021
  3. Nature
    Emulator-based Bayesian optimization for efficient multi-objective calibration of an individual-based model of malaria
    Theresa Reiker, Monica Golumbeanu, Andrew Shattock, and 5 more authors
    Nature communications, 2021
  4. Elife
    Heterogeneous contributions of change in population distribution of body mass index to change in obesity and underweight
    NCD Risk Factor Collaboration
    Elife, 2021

2020

  1. CurrentBiology
    Inference of multisite phosphorylation rate constants and their modulation by pathogenic mutations
    Eyan Yeung, Sarah McFann, Lewis Marsh, and 5 more authors
    Current Biology, 2020
  2. Allergy
    Connectivity patterns between multiple allergen specific IgE antibodies and their association with severe asthma
    Graham Roberts, Sara Fontanella, Anna Selby, and 8 more authors
    Journal of allergy and clinical immunology, 2020
  3. Nature
    State-level tracking of COVID-19 in the United States
    H Juliette T Unwin, Swapnil Mishra, Valerie C Bradley, and 8 more authors
    Nature communications, 2020
  4. ScientificReports
    Accelerated MRI-predicted brain ageing and its associations with cardiometabolic and brain disorders
    Arinbjörn Kolbeinsson, Sarah Filippi, Yannis Panagakis, and 4 more authors
    Scientific Reports, 2020
  5. FDS
    A Bayesian nonparametric test for conditional independence
    Onur Teymur, and Sarah Filippi
    Foundations of Data Science, 2020

2019

  1. Pediatrics
    Blood biomarkers of sensitization and asthma
    Hans-Joachim Sonntag, Sarah Filippi, Spyros Pipis, and 1 more author
    Frontiers in Pediatrics, 2019

2018

  1. StatComp
    Large-scale kernel methods for independence testing
    Qinyi Zhang, Sarah Filippi, Arthur Gretton, and 1 more author
    Statistics and Computing, 2018
  2. Bioinformatics
    PEITH (Θ): perfecting experiments with information theory in Python with GPU support
    Leander Dony, Jonas Mackerodt, Scott Ward, and 3 more authors
    Bioinformatics, 2018
  3. Interface
    Chronic TNFα-driven injury delays cell migration to villi in the intestinal epithelium
    Daniele Muraro, Aimee Parker, Laura Vaux, and 7 more authors
    Journal of The Royal Society Interface, 2018
  4. Nature
    An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling
    Tomasz Jetka, Karol Nienałtowski, Sarah Filippi, and 2 more authors
    Nature communications, 2018

2017

  1. BayesianAnalysis
    A Bayesian Nonparametric Approach to Testing for Dependence Between Random Variables
    Sarah Filippi, and Chris C Holmes
    Bayesian Analysis, 2017
  2. BMC
    The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq
    Quin F Wills, Esther Mellado-Gomez, Rory Nolan, and 8 more authors
    BMC genomics, 2017
  3. Biophysical
    Nanog fluctuations in embryonic stem cells highlight the problem of measurement in cell biology
    Rosanna CG Smith, Patrick S Stumpf, Sonya J Ridden, and 4 more authors
    Biophysical journal, 2017
  4. UAI
    Feature-to-feature regression for a two-step conditional independence test
    Qinyi Zhang, Sarah Filippi, Seth Flaxman, and 1 more author
    2017

2016

  1. UAI
    Bayesian learning of kernel embeddings
    S Filippi, S Flaxman, D Sejdinovic, and 1 more author
    In Proceedings of the Thirty-Second Conference on Uncertainty in Artificial Intelligence, 2016
  2. EJS
    Scalable Bayesian nonparametric measures for exploring pairwise dependence via Dirichlet Process Mixtures
    Sarah Filippi, Chris C Holmes, and Luis E Nieto-Barajas
    Electronic journal of statistics, 2016
  3. Cell
    Robustness of MEK-ERK dynamics and origins of cell-to-cell variability in MAPK signaling
    Sarah Filippi, Chris P Barnes, Paul DW Kirk, and 7 more authors
    Cell reports, 2016
  4. Haematologica
    Genome wide dysregulation of gene expression by Trisomy 21 in fetal liver haematopoietic stem and progenitor cells
    A Roy, B Liu, K Goudevenou, and 8 more authors
    Haematologica, 2016

2015

  1. EMBO
    Stem and progenitor cell dysfunction in human trisomies
    Binbin Liu, Sarah Filippi, Anindita Roy, and 1 more author
    EMBO reports, 2015
  2. Interface
    Information processing by simple molecular motifs and susceptibility to noise
    Siobhan S Mc Mahon, Oleg Lenive, Sarah Filippi, and 1 more author
    Journal of The Royal Society Interface, 2015

2014

  1. Nature
    A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation
    Juliane Liepe, Paul Kirk, Sarah Filippi, and 3 more authors
    Nature protocols, 2014
  2. PNAS
    The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemia
    Adam L MacLean, Sarah Filippi, and Michael PH Stumpf
    Proceedings of the National Academy of Sciences, 2014
  3. CellDevBio
    Information theory and signal transduction systems: from molecular information processing to network inference
    Siobhan S Mc Mahon, Aaron Sim, Sarah Filippi, and 4 more authors
    In Seminars in cell & developmental biology, 2014

2013

  1. PLoS
    Maximizing the information content of experiments in systems biology
    Juliane Liepe, Sarah Filippi, Michał Komorowski, and 1 more author
    PLoS computational biology, 2013
  2. SAGMB
    Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems
    Daniel Silk, Sarah Filippi, and Michael PH Stumpf
    Statistical applications in genetics and molecular biology, 2013
  3. SAGMB
    On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo
    Sarah Filippi, Chris P Barnes, Julien Cornebise, and 1 more author
    Statistical applications in genetics and molecular biology, 2013

2012

  1. StatComp
    Considerate approaches to constructing summary statistics for ABC model selection
    Chris P Barnes, Sarah Filippi, Michael PH Stumpf, and 1 more author
    Statistics and Computing, 2012
  2. PNAS
    Perturbation of fetal liver hematopoietic stem and progenitor cell development by trisomy 21
    Anindita Roy, Gillian Cowan, Adam J Mead, and 8 more authors
    Proceedings of the National Academy of Sciences, 2012

2010

  1. Allerton
    Optimism in reinforcement learning and Kullback-Leibler divergence
    Sarah Filippi, Olivier Cappé, and Aurélien Garivier
    In 2010 48th Annual Allerton Conference on Communication, Control, and Computing (Allerton), 2010
  2. IEEE
    Optimally sensing a single channel without prior information: The tiling algorithm and regret bounds
    Sarah Filippi, Olivier Cappé, and Aurélien Garivier
    IEEE Journal of Selected Topics in Signal Processing, 2010
  3. NeurIPS
    Parametric bandits: The generalized linear case
    Sarah Filippi, Olivier Cappe, Aurélien Garivier, and 1 more author
    Advances in neural information processing systems, 2010

2008

  1. EWRL
    A near optimal policy for channel allocation in cognitive radio
    Sarah Filippi, Olivier Cappé, Fabrice Clérot, and 1 more author
    In Recent Advances in Reinforcement Learning: 8th European Workshop, EWRL 2008, Villeneuve d?Ascq, France, June 30-July 3, 2008, Revised and Selected Papers 8, 2008