Publications

2025

1. AISTAT

   QuACK: A Multipurpose Queuing Algorithm for Cooperative -Armed Bandits

   Benjamin Howson, Sarah Filippi, and Ciara Pike-Burke

   In International Conference on Artificial Intelligence and Statistics, 2025

   arXiv Bib PDF

   

   @inproceedings{howson2025quack,
     title = {QuACK: A Multipurpose Queuing Algorithm for Cooperative -Armed Bandits},
     author = {Howson, Benjamin and Filippi, Sarah and Pike-Burke, Ciara},
     booktitle = {International Conference on Artificial Intelligence and Statistics},
     year = {2025},
     organization = {PMLR},
   }

2. AISTAT

   Weighted Sum of Gaussian Process Latent Variable Models

   James Odgers, Ruby Sedgwick, Chrysoula Kappatou, and 2 more authors

   In International Conference on Artificial Intelligence and Statistics, 2025

   arXiv Bib PDF

   

   @inproceedings{odgers2025,
     title = {Weighted Sum of Gaussian Process Latent Variable Models},
     author = {Odgers, James and Sedgwick, Ruby and Kappatou, Chrysoula and Misener, Ruth and Filippi, Sarah},
     booktitle = {International Conference on Artificial Intelligence and Statistics},
     year = {2025},
     organization = {PMLR},
   }

2024

1. ICML

   Logistic Variational Bayes Revisited

   Michael Komodromos, Marina Evangelou, and Sarah Filippi

   In ICML, 2024

   arXiv Bib PDF

   @inproceedings{komodromos2024logistic,
     title = {Logistic Variational Bayes Revisited},
     author = {Komodromos, Michael and Evangelou, Marina and Filippi, Sarah},
     booktitle = {ICML},
     year = {2024},
   }

2. Nature

   Cardiometabolic and renal phenotypes and transitions in the United States population

   Victor PF Lhoste, Bin Zhou, Anu Mishra, and 6 more authors

   Nature cardiovascular research, 2024

   Bib

   

   @article{lhoste2024cardiometabolic,
     title = {Cardiometabolic and renal phenotypes and transitions in the United States population},
     author = {Lhoste, Victor PF and Zhou, Bin and Mishra, Anu and Bennett, James E and Filippi, Sarah and Asaria, Perviz and Gregg, Edward W and Danaei, Goodarz and Ezzati, Majid},
     journal = {Nature cardiovascular research},
     volume = {3},
     number = {1},
     pages = {46--59},
     year = {2024},
     publisher = {Nature Publishing Group UK London},
   }

3. ComBiology

   Genomic attributes of airway commensal bacteria and mucosa

   Leah Cuthbertson, Ulrike Löber, Jonathan S Ish-Horowicz, and 8 more authors

   Communications Biology, 2024

   Bib

   @article{cuthbertson2024genomic,
     title = {Genomic attributes of airway commensal bacteria and mucosa},
     author = {Cuthbertson, Leah and L{\"o}ber, Ulrike and Ish-Horowicz, Jonathan S and McBrien, Claire N and Churchward, Colin and Parker, Jeremy C and Olanipekun, Michael T and Burke, Conor and McGowan, Aisling and Davies, Gwyneth A and others},
     journal = {Communications Biology},
     volume = {7},
     number = {1},
     pages = {171},
     year = {2024},
     publisher = {Nature Publishing Group UK London},
   }

4. Lancet

   General and abdominal adiposity and hypertension in eight world regions: a pooled analysis of 837 population-based studies with 7.5 million participants

   Bin Zhou, James E Bennett, Aidan P Wickham, and 8 more authors

   The Lancet, 2024

   Bib

   

   @article{zhou2024general,
     title = {General and abdominal adiposity and hypertension in eight world regions: a pooled analysis of 837 population-based studies with 7.5 million participants},
     author = {Zhou, Bin and Bennett, James E and Wickham, Aidan P and Singleton, Rosie K and Mishra, Anu and Carrillo-Larco, Rodrigo M and Ikeda, Nayu and Jain, Lakshya and Barradas-Pires, Ana and Heap, Rachel A and others},
     journal = {The Lancet},
     volume = {404},
     number = {10455},
     pages = {851--863},
     year = {2024},
     publisher = {Elsevier},
   }

2023

1. CompStat

   BART-based inference for Poisson processes

   Stamatina Lamprinakou, Mauricio Barahona, Seth Flaxman, and 3 more authors

   Computational Statistics & Data Analysis, 2023

   Bib

   @article{lamprinakou2023bart,
     title = {BART-based inference for Poisson processes},
     author = {Lamprinakou, Stamatina and Barahona, Mauricio and Flaxman, Seth and Filippi, Sarah and Gandy, Axel and McCoy, Emma J},
     journal = {Computational Statistics \& Data Analysis},
     volume = {180},
     pages = {107658},
     year = {2023},
     publisher = {North-Holland},
   }

2. JRSS

   Automated calibration for stability selection in penalised regression and graphical models

   Barbara Bodinier, Sarah Filippi, Therese Haugdahl Nøst, and 2 more authors

   Journal of the Royal Statistical Society Series C: Applied Statistics, 2023

   Bib

   

   @article{bodinier2023automated,
     title = {Automated calibration for stability selection in penalised regression and graphical models},
     author = {Bodinier, Barbara and Filippi, Sarah and N{\o}st, Therese Haugdahl and Chiquet, Julien and Chadeau-Hyam, Marc},
     journal = {Journal of the Royal Statistical Society Series C: Applied Statistics},
     volume = {72},
     number = {5},
     pages = {1375--1393},
     year = {2023},
     publisher = {Oxford University Press US},
   }

3. AISTAT

   Delayed feedback in generalised linear bandits revisited

   Benjamin Howson, Ciara Pike-Burke, and Sarah Filippi

   In International Conference on Artificial Intelligence and Statistics, 2023

   arXiv Bib PDF

   

   @inproceedings{howson2023delayed,
     title = {Delayed feedback in generalised linear bandits revisited},
     author = {Howson, Benjamin and Pike-Burke, Ciara and Filippi, Sarah},
     booktitle = {International Conference on Artificial Intelligence and Statistics},
     pages = {6095--6119},
     year = {2023},
     organization = {PMLR},
   }

4. AIChE

   Probabilistic predictions for partial least squares using bootstrap

   James Odgers, Chrysoula Kappatou, Ruth Misener, and 2 more authors

   AIChE Journal, 2023

   Bib

   

   @article{odgers2023probabilistic,
     title = {Probabilistic predictions for partial least squares using bootstrap},
     author = {Odgers, James and Kappatou, Chrysoula and Misener, Ruth and Garc{\'\i}a Mu{\~n}oz, Salvador and Filippi, Sarah},
     journal = {AIChE Journal},
     volume = {69},
     number = {7},
     pages = {e18071},
     year = {2023},
     publisher = {John Wiley \& Sons, Inc. Hoboken, USA},
   }

5. AISTAT

   Optimism and delays in episodic reinforcement learning

   Benjamin Howson, Ciara Pike-Burke, and Sarah Filippi

   In International Conference on Artificial Intelligence and Statistics, 2023

   arXiv Bib PDF

   

   @inproceedings{howson2023optimism,
     title = {Optimism and delays in episodic reinforcement learning},
     author = {Howson, Benjamin and Pike-Burke, Ciara and Filippi, Sarah},
     booktitle = {International Conference on Artificial Intelligence and Statistics},
     pages = {6061--6094},
     year = {2023},
     organization = {PMLR},
   }

6. Bioinformatics

   Automated calibration of consensus weighted distance-based clustering approaches using sharp

   Barbara Bodinier, Dragana Vuckovic, Sabrina Rodrigues, and 3 more authors

   Bioinformatics, 2023

   Bib

   @article{bodinier2023automatee,
     title = {Automated calibration of consensus weighted distance-based clustering approaches using sharp},
     author = {Bodinier, Barbara and Vuckovic, Dragana and Rodrigues, Sabrina and Filippi, Sarah and Chiquet, Julien and Chadeau-Hyam, Marc},
     journal = {Bioinformatics},
     volume = {39},
     number = {11},
     pages = {btad635},
     year = {2023},
     publisher = {Oxford University Press},
   }

2022

1. JCGS

   Bayesian kernel two-sample testing

   Qinyi Zhang, Veit Wild, Sarah Filippi, and 2 more authors

   Journal of Computational and Graphical Statistics, 2022

   Bib

   @article{zhang2022bayesian,
     title = {Bayesian kernel two-sample testing},
     author = {Zhang, Qinyi and Wild, Veit and Filippi, Sarah and Flaxman, Seth and Sejdinovic, Dino},
     journal = {Journal of Computational and Graphical Statistics},
     volume = {31},
     number = {4},
     pages = {1164--1176},
     year = {2022},
     publisher = {Taylor \& Francis},
   }

2. Bioinformatics

   Variational Bayes for high-dimensional proportional hazards models with applications within gene expression

   Michael Komodromos, Eric O Aboagye, Marina Evangelou, and 2 more authors

   Bioinformatics, 2022

   arXiv Bib PDF

   

   @article{komodromos2022variational,
     title = {Variational Bayes for high-dimensional proportional hazards models with applications within gene expression},
     author = {Komodromos, Michael and Aboagye, Eric O and Evangelou, Marina and Filippi, Sarah and Ray, Kolyan},
     journal = {Bioinformatics},
     volume = {38},
     number = {16},
     pages = {3918--3926},
     year = {2022},
     publisher = {Oxford University Press},
   }

2021

1. Science

   Age groups that sustain resurging COVID-19 epidemics in the United States

   Mélodie Monod, Alexandra Blenkinsop, Xiaoyue Xi, and 8 more authors

   Science, 2021

   Bib

   @article{monod2021age,
     title = {Age groups that sustain resurging COVID-19 epidemics in the United States},
     author = {Monod, M{\'e}lodie and Blenkinsop, Alexandra and Xi, Xiaoyue and Hebert, Daniel and Bershan, Sivan and Tietze, Simon and Baguelin, Marc and Bradley, Valerie C and Chen, Yu and Coupland, Helen and others},
     journal = {Science},
     volume = {371},
     number = {6536},
     pages = {eabe8372},
     year = {2021},
     publisher = {American Association for the Advancement of Science},
   }

2. Allergy

   Atopic dermatitis or eczema? Consequences of ambiguity in disease name for biomedical literature mining

   Clément Frainay, Yoann Pitarch, Sarah Filippi, and 2 more authors

   Clinical & Experimental Allergy, 2021

   Bib

   @article{frainay2021atopic,
     title = {Atopic dermatitis or eczema? Consequences of ambiguity in disease name for biomedical literature mining},
     author = {Frainay, Cl{\'e}ment and Pitarch, Yoann and Filippi, Sarah and Evangelou, Marina and Custovic, Adnan},
     journal = {Clinical \& Experimental Allergy},
     volume = {51},
     number = {9},
     pages = {1185--1194},
     year = {2021},
   }

3. Nature

   Emulator-based Bayesian optimization for efficient multi-objective calibration of an individual-based model of malaria

   Theresa Reiker, Monica Golumbeanu, Andrew Shattock, and 5 more authors

   Nature communications, 2021

   Bib

   

   @article{reiker2021emulator,
     title = {Emulator-based Bayesian optimization for efficient multi-objective calibration of an individual-based model of malaria},
     author = {Reiker, Theresa and Golumbeanu, Monica and Shattock, Andrew and Burgert, Lydia and Smith, Thomas A and Filippi, Sarah and Cameron, Ewan and Penny, Melissa A},
     journal = {Nature communications},
     volume = {12},
     number = {1},
     pages = {7212},
     year = {2021},
     publisher = {Nature Publishing Group UK London},
   }

4. Elife

   Heterogeneous contributions of change in population distribution of body mass index to change in obesity and underweight

   NCD Risk Factor Collaboration

   Elife, 2021

   Bib

   

   @article{ncd2021heterogeneous,
     title = {Heterogeneous contributions of change in population distribution of body mass index to change in obesity and underweight},
     author = {Collaboration, NCD Risk Factor},
     journal = {Elife},
     volume = {10},
     pages = {e60060},
     year = {2021},
     publisher = {eLife Sciences Publications, Ltd},
   }

2020

1. CurrentBiology

   Inference of multisite phosphorylation rate constants and their modulation by pathogenic mutations

   Eyan Yeung, Sarah McFann, Lewis Marsh, and 5 more authors

   Current Biology, 2020

   Bib

   @article{yeung2020inference,
     title = {Inference of multisite phosphorylation rate constants and their modulation by pathogenic mutations},
     author = {Yeung, Eyan and McFann, Sarah and Marsh, Lewis and Dufresne, Emilie and Filippi, Sarah and Harrington, Heather A and Shvartsman, Stanislav Y and W{\"u}hr, Martin},
     journal = {Current Biology},
     volume = {30},
     number = {5},
     pages = {877--882},
     year = {2020},
     publisher = {Elsevier},
   }

2. Allergy

   Connectivity patterns between multiple allergen specific IgE antibodies and their association with severe asthma

   Graham Roberts, Sara Fontanella, Anna Selby, and 8 more authors

   Journal of allergy and clinical immunology, 2020

   Bib

   @article{roberts2020connectivity,
     title = {Connectivity patterns between multiple allergen specific IgE antibodies and their association with severe asthma},
     author = {Roberts, Graham and Fontanella, Sara and Selby, Anna and Howard, Rebecca and Filippi, Sarah and Hedlin, Gunilla and Nordlund, Bjorn and Howarth, Peter and Hashimoto, Simone and Brinkman, Peter and others},
     journal = {Journal of allergy and clinical immunology},
     volume = {146},
     number = {4},
     pages = {821--830},
     year = {2020},
     publisher = {Mosby},
   }

3. Nature

   State-level tracking of COVID-19 in the United States

   H Juliette T Unwin, Swapnil Mishra, Valerie C Bradley, and 8 more authors

   Nature communications, 2020

   Bib

   @article{unwin2020state,
     title = {State-level tracking of COVID-19 in the United States},
     author = {Unwin, H Juliette T and Mishra, Swapnil and Bradley, Valerie C and Gandy, Axel and Mellan, Thomas A and Coupland, Helen and Ish-Horowicz, Jonathan and Vollmer, Michaela AC and Whittaker, Charles and Filippi, Sarah L and others},
     journal = {Nature communications},
     volume = {11},
     number = {1},
     pages = {6189},
     year = {2020},
     publisher = {Nature Publishing Group UK London},
   }

4. ScientificReports

   Accelerated MRI-predicted brain ageing and its associations with cardiometabolic and brain disorders

   Arinbjörn Kolbeinsson, Sarah Filippi, Yannis Panagakis, and 4 more authors

   Scientific Reports, 2020

   Bib

   

   @article{kolbeinsson2020accelerated,
     title = {Accelerated MRI-predicted brain ageing and its associations with cardiometabolic and brain disorders},
     author = {Kolbeinsson, Arinbj{\"o}rn and Filippi, Sarah and Panagakis, Yannis and Matthews, Paul M and Elliott, Paul and Dehghan, Abbas and Tzoulaki, Ioanna},
     journal = {Scientific Reports},
     volume = {10},
     number = {1},
     pages = {19940},
     year = {2020},
     publisher = {Nature Publishing Group UK London},
   }

5. FDS

   A Bayesian nonparametric test for conditional independence

   Onur Teymur, and Sarah Filippi

   Foundations of Data Science, 2020

   arXiv Bib PDF

   @article{teymur2020bayesian,
     title = {A Bayesian nonparametric test for conditional independence},
     author = {Teymur, Onur and Filippi, Sarah},
     journal = {Foundations of Data Science},
     volume = {2},
     number = {2},
     pages = {155--172},
     year = {2020},
     publisher = {Foundations of Data Science},
   }

2019

1. Pediatrics

   Blood biomarkers of sensitization and asthma

   Hans-Joachim Sonntag, Sarah Filippi, Spyros Pipis, and 1 more author

   Frontiers in Pediatrics, 2019

   Bib

   @article{sonntag2019blood,
     title = {Blood biomarkers of sensitization and asthma},
     author = {Sonntag, Hans-Joachim and Filippi, Sarah and Pipis, Spyros and Custovic, Adnan},
     journal = {Frontiers in Pediatrics},
     volume = {7},
     pages = {251},
     year = {2019},
     publisher = {Frontiers Media SA},
   }

2018

1. StatComp

   Large-scale kernel methods for independence testing

   Qinyi Zhang, Sarah Filippi, Arthur Gretton, and 1 more author

   Statistics and Computing, 2018

   arXiv Bib PDF

   

   @article{zhang2018large,
     title = {Large-scale kernel methods for independence testing},
     author = {Zhang, Qinyi and Filippi, Sarah and Gretton, Arthur and Sejdinovic, Dino},
     journal = {Statistics and Computing},
     volume = {28},
     pages = {113--130},
     year = {2018},
     publisher = {Springer US},
   }

2. Bioinformatics

   PEITH (Θ): perfecting experiments with information theory in Python with GPU support

   Leander Dony, Jonas Mackerodt, Scott Ward, and 3 more authors

   Bioinformatics, 2018

   Bib

   @article{dony2018peith,
     title = {PEITH ($\Theta$): perfecting experiments with information theory in Python with GPU support},
     author = {Dony, Leander and Mackerodt, Jonas and Ward, Scott and Filippi, Sarah and Stumpf, Michael PH and Liepe, Juliane},
     journal = {Bioinformatics},
     volume = {34},
     number = {7},
     pages = {1249--1250},
     year = {2018},
     publisher = {Oxford University Press},
   }

3. Interface

   Chronic TNFα-driven injury delays cell migration to villi in the intestinal epithelium

   Daniele Muraro, Aimee Parker, Laura Vaux, and 7 more authors

   Journal of The Royal Society Interface, 2018

   Bib

   @article{muraro2018chronic,
     title = {Chronic TNF$\alpha$-driven injury delays cell migration to villi in the intestinal epithelium},
     author = {Muraro, Daniele and Parker, Aimee and Vaux, Laura and Filippi, Sarah and Almet, Axel A and Fletcher, Alexander G and Watson, Alastair JM and Pin, Carmen and Maini, Philip K and Byrne, Helen M},
     journal = {Journal of The Royal Society Interface},
     volume = {15},
     number = {145},
     pages = {20180037},
     year = {2018},
     publisher = {The Royal Society},
   }

4. Nature

   An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling

   Tomasz Jetka, Karol Nienałtowski, Sarah Filippi, and 2 more authors

   Nature communications, 2018

   Bib

   @article{jetka2018information,
     title = {An information-theoretic framework for deciphering pleiotropic and noisy biochemical signaling},
     author = {Jetka, Tomasz and Niena{\l}towski, Karol and Filippi, Sarah and Stumpf, Michael PH and Komorowski, Micha{\l}},
     journal = {Nature communications},
     volume = {9},
     number = {1},
     pages = {4591},
     year = {2018},
     publisher = {Nature Publishing Group UK London},
   }

2017

1. BayesianAnalysis

   A Bayesian Nonparametric Approach to Testing for Dependence Between Random Variables

   Sarah Filippi, and Chris C Holmes

   Bayesian Analysis, 2017

   arXiv Bib PDF

   @article{filippi2017bayesian,
     title = {A Bayesian Nonparametric Approach to Testing for Dependence Between Random Variables},
     author = {Filippi, Sarah and Holmes, Chris C},
     journal = {Bayesian Analysis},
     volume = {12},
     number = {4},
     pages = {919--938},
     year = {2017},
   }

2. BMC

   The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq

   Quin F Wills, Esther Mellado-Gomez, Rory Nolan, and 8 more authors

   BMC genomics, 2017

   Bib

   @article{wills2017nature,
     title = {The nature and nurture of cell heterogeneity: accounting for macrophage gene-environment interactions with single-cell RNA-Seq},
     author = {Wills, Quin F and Mellado-Gomez, Esther and Nolan, Rory and Warner, Damien and Sharma, Eshita and Broxholme, John and Wright, Benjamin and Lockstone, Helen and James, William and Lynch, Mark and others},
     journal = {BMC genomics},
     volume = {18},
     pages = {1--13},
     year = {2017},
     publisher = {BioMed Central},
   }

3. Biophysical

   Nanog fluctuations in embryonic stem cells highlight the problem of measurement in cell biology

   Rosanna CG Smith, Patrick S Stumpf, Sonya J Ridden, and 4 more authors

   Biophysical journal, 2017

   Bib

   @article{smith2017nanog,
     title = {Nanog fluctuations in embryonic stem cells highlight the problem of measurement in cell biology},
     author = {Smith, Rosanna CG and Stumpf, Patrick S and Ridden, Sonya J and Sim, Aaron and Filippi, Sarah and Harrington, Heather A and MacArthur, Ben D},
     journal = {Biophysical journal},
     volume = {112},
     number = {12},
     pages = {2641--2652},
     year = {2017},
     publisher = {Elsevier},
   }

4. UAI

   Feature-to-feature regression for a two-step conditional independence test

   Qinyi Zhang, Sarah Filippi, Seth Flaxman, and 1 more author

   2017

   Bib

   @article{zhang2017feature,
     title = {Feature-to-feature regression for a two-step conditional independence test},
     author = {Zhang, Qinyi and Filippi, Sarah and Flaxman, Seth and Sejdinovic, Dino},
     year = {2017},
     publisher = {Association for Uncertainty in Artificial Intelligence},
   }

2016

1. UAI

   Bayesian learning of kernel embeddings

   S Filippi, S Flaxman, D Sejdinovic, and 1 more author

   In Proceedings of the Thirty-Second Conference on Uncertainty in Artificial Intelligence, 2016

   Bib

   @inproceedings{filippi2016bayesian,
     title = {Bayesian learning of kernel embeddings},
     author = {Filippi, S and Flaxman, S and Sejdinovic, D and Cunningham, J},
     booktitle = {Proceedings of the Thirty-Second Conference on Uncertainty in Artificial Intelligence},
     year = {2016},
     organization = {Association for Computing Machinery},
   }

2. EJS

   Scalable Bayesian nonparametric measures for exploring pairwise dependence via Dirichlet Process Mixtures

   Sarah Filippi, Chris C Holmes, and Luis E Nieto-Barajas

   Electronic journal of statistics, 2016

   arXiv Bib PDF

   @article{filippi2016scalable,
     title = {Scalable Bayesian nonparametric measures for exploring pairwise dependence via Dirichlet Process Mixtures},
     author = {Filippi, Sarah and Holmes, Chris C and Nieto-Barajas, Luis E},
     journal = {Electronic journal of statistics},
     volume = {10},
     number = {2},
     pages = {3338},
     year = {2016},
     publisher = {Europe PMC Funders},
   }

3. Cell

   Robustness of MEK-ERK dynamics and origins of cell-to-cell variability in MAPK signaling

   Sarah Filippi, Chris P Barnes, Paul DW Kirk, and 7 more authors

   Cell reports, 2016

   Bib

   @article{filippi2016robustness,
     title = {Robustness of MEK-ERK dynamics and origins of cell-to-cell variability in MAPK signaling},
     author = {Filippi, Sarah and Barnes, Chris P and Kirk, Paul DW and Kudo, Takamasa and Kunida, Katsuyuki and McMahon, Siobhan S and Tsuchiya, Takaho and Wada, Takumi and Kuroda, Shinya and Stumpf, Michael PH},
     journal = {Cell reports},
     volume = {15},
     number = {11},
     pages = {2524--2535},
     year = {2016},
     publisher = {Elsevier},
   }

4. Haematologica

   Genome wide dysregulation of gene expression by Trisomy 21 in fetal liver haematopoietic stem and progenitor cells

   A Roy, B Liu, K Goudevenou, and 8 more authors

   Haematologica, 2016

   Bib

   @article{roy2016genome,
     title = {Genome wide dysregulation of gene expression by Trisomy 21 in fetal liver haematopoietic stem and progenitor cells},
     author = {Roy, A and Liu, B and Goudevenou, K and Bohn, G and Filippi, S and Elliott, N and Cowan, G and O'Connor, D and Bhatnagar, N and Vyas, P and others},
     journal = {Haematologica},
     volume = {101},
     year = {2016},
     publisher = {Ferrata Storti Foundation},
   }

2015

1. EMBO

   Stem and progenitor cell dysfunction in human trisomies

   Binbin Liu, Sarah Filippi, Anindita Roy, and 1 more author

   EMBO reports, 2015

   Bib

   @article{liu2015stem,
     title = {Stem and progenitor cell dysfunction in human trisomies},
     author = {Liu, Binbin and Filippi, Sarah and Roy, Anindita and Roberts, Irene},
     journal = {EMBO reports},
     volume = {16},
     number = {1},
     pages = {44--62},
     year = {2015},
   }

2. Interface

   Information processing by simple molecular motifs and susceptibility to noise

   Siobhan S Mc Mahon, Oleg Lenive, Sarah Filippi, and 1 more author

   Journal of The Royal Society Interface, 2015

   Bib

   @article{mc2015information,
     title = {Information processing by simple molecular motifs and susceptibility to noise},
     author = {Mc Mahon, Siobhan S and Lenive, Oleg and Filippi, Sarah and Stumpf, Michael PH},
     journal = {Journal of The Royal Society Interface},
     volume = {12},
     number = {110},
     pages = {20150597},
     year = {2015},
     publisher = {The Royal Society},
   }

2014

1. Nature

   A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation

   Juliane Liepe, Paul Kirk, Sarah Filippi, and 3 more authors

   Nature protocols, 2014

   Bib

   

   @article{liepe2014framework,
     title = {A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation},
     author = {Liepe, Juliane and Kirk, Paul and Filippi, Sarah and Toni, Tina and Barnes, Chris P and Stumpf, Michael PH},
     journal = {Nature protocols},
     volume = {9},
     number = {2},
     pages = {439--456},
     year = {2014},
     publisher = {Nature Publishing Group UK London},
   }

2. PNAS

   The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemia

   Adam L MacLean, Sarah Filippi, and Michael PH Stumpf

   Proceedings of the National Academy of Sciences, 2014

   Bib

   @article{maclean2014ecology,
     title = {The ecology in the hematopoietic stem cell niche determines the clinical outcome in chronic myeloid leukemia},
     author = {MacLean, Adam L and Filippi, Sarah and Stumpf, Michael PH},
     journal = {Proceedings of the National Academy of Sciences},
     volume = {111},
     number = {10},
     pages = {3883--3888},
     year = {2014},
     publisher = {National Academy of Sciences},
   }

3. CellDevBio

   Information theory and signal transduction systems: from molecular information processing to network inference

   Siobhan S Mc Mahon, Aaron Sim, Sarah Filippi, and 4 more authors

   In Seminars in cell & developmental biology, 2014

   Bib

   @inproceedings{mc2014information,
     title = {Information theory and signal transduction systems: from molecular information processing to network inference},
     author = {Mc Mahon, Siobhan S and Sim, Aaron and Filippi, Sarah and Johnson, Robert and Liepe, Juliane and Smith, Dominic and Stumpf, Michael PH},
     booktitle = {Seminars in cell \& developmental biology},
     volume = {35},
     pages = {98--108},
     year = {2014},
     organization = {Academic Press},
   }

2013

1. PLoS

   Maximizing the information content of experiments in systems biology

   Juliane Liepe, Sarah Filippi, Michał Komorowski, and 1 more author

   PLoS computational biology, 2013

   Bib

   

   @article{liepe2013maximizing,
     title = {Maximizing the information content of experiments in systems biology},
     author = {Liepe, Juliane and Filippi, Sarah and Komorowski, Micha{\l} and Stumpf, Michael PH},
     journal = {PLoS computational biology},
     volume = {9},
     number = {1},
     pages = {e1002888},
     year = {2013},
     publisher = {Public Library of Science San Francisco, USA},
   }

2. SAGMB

   Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems

   Daniel Silk, Sarah Filippi, and Michael PH Stumpf

   Statistical applications in genetics and molecular biology, 2013

   Bib

   @article{silk2013optimizing,
     title = {Optimizing threshold-schedules for sequential approximate Bayesian computation: applications to molecular systems},
     author = {Silk, Daniel and Filippi, Sarah and Stumpf, Michael PH},
     journal = {Statistical applications in genetics and molecular biology},
     volume = {12},
     number = {5},
     pages = {603--618},
     year = {2013},
     publisher = {De Gruyter},
   }

3. SAGMB

   On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo

   Sarah Filippi, Chris P Barnes, Julien Cornebise, and 1 more author

   Statistical applications in genetics and molecular biology, 2013

   Bib

   

   @article{filippi2013optimality,
     title = {On optimality of kernels for approximate Bayesian computation using sequential Monte Carlo},
     author = {Filippi, Sarah and Barnes, Chris P and Cornebise, Julien and Stumpf, Michael PH},
     journal = {Statistical applications in genetics and molecular biology},
     volume = {12},
     number = {1},
     pages = {87--107},
     year = {2013},
     publisher = {De Gruyter},
   }

2012

1. StatComp

   Considerate approaches to constructing summary statistics for ABC model selection

   Chris P Barnes, Sarah Filippi, Michael PH Stumpf, and 1 more author

   Statistics and Computing, 2012

   Bib

   @article{barnes2012considerate,
     title = {Considerate approaches to constructing summary statistics for ABC model selection},
     author = {Barnes, Chris P and Filippi, Sarah and Stumpf, Michael PH and Thorne, Thomas},
     journal = {Statistics and Computing},
     volume = {22},
     pages = {1181--1197},
     year = {2012},
     publisher = {Springer US},
   }

2. PNAS

   Perturbation of fetal liver hematopoietic stem and progenitor cell development by trisomy 21

   Anindita Roy, Gillian Cowan, Adam J Mead, and 8 more authors

   Proceedings of the National Academy of Sciences, 2012

   Bib

   @article{roy2012perturbation,
     title = {Perturbation of fetal liver hematopoietic stem and progenitor cell development by trisomy 21},
     author = {Roy, Anindita and Cowan, Gillian and Mead, Adam J and Filippi, Sarah and Bohn, Georg and Chaidos, Aristeidis and Tunstall, Oliver and Chan, Jerry KY and Choolani, Mahesh and Bennett, Phillip and others},
     journal = {Proceedings of the National Academy of Sciences},
     volume = {109},
     number = {43},
     pages = {17579--17584},
     year = {2012},
     publisher = {National Academy of Sciences},
     googel_scholar_id = {Se3iqnhoufwC}
   }

2010

1. Allerton

   Optimism in reinforcement learning and Kullback-Leibler divergence

   Sarah Filippi, Olivier Cappé, and Aurélien Garivier

   In 2010 48th Annual Allerton Conference on Communication, Control, and Computing (Allerton), 2010

   Bib

   

   @inproceedings{filippi2010optimism,
     title = {Optimism in reinforcement learning and Kullback-Leibler divergence},
     author = {Filippi, Sarah and Capp{\'e}, Olivier and Garivier, Aur{\'e}lien},
     booktitle = {2010 48th Annual Allerton Conference on Communication, Control, and Computing (Allerton)},
     pages = {115--122},
     year = {2010},
     organization = {IEEE},
   }

2. IEEE

   Optimally sensing a single channel without prior information: The tiling algorithm and regret bounds

   Sarah Filippi, Olivier Cappé, and Aurélien Garivier

   IEEE Journal of Selected Topics in Signal Processing, 2010

   Bib

   @article{filippi2010optimally,
     title = {Optimally sensing a single channel without prior information: The tiling algorithm and regret bounds},
     author = {Filippi, Sarah and Capp{\'e}, Olivier and Garivier, Aur{\'e}lien},
     journal = {IEEE Journal of Selected Topics in Signal Processing},
     volume = {5},
     number = {1},
     pages = {68--76},
     year = {2010},
     publisher = {IEEE},
   }

3. NeurIPS

   Parametric bandits: The generalized linear case

   Sarah Filippi, Olivier Cappe, Aurélien Garivier, and 1 more author

   Advances in neural information processing systems, 2010

   Bib

   

   @article{filippi2010parametric,
     title = {Parametric bandits: The generalized linear case},
     author = {Filippi, Sarah and Cappe, Olivier and Garivier, Aur{\'e}lien and Szepesv{\'a}ri, Csaba},
     journal = {Advances in neural information processing systems},
     volume = {23},
     year = {2010},
   }

2008

1. EWRL

   A near optimal policy for channel allocation in cognitive radio

   Sarah Filippi, Olivier Cappé, Fabrice Clérot, and 1 more author

   In Recent Advances in Reinforcement Learning: 8th European Workshop, EWRL 2008, Villeneuve d?Ascq, France, June 30-July 3, 2008, Revised and Selected Papers 8, 2008

   Bib

   @inproceedings{filippi2008near,
     title = {A near optimal policy for channel allocation in cognitive radio},
     author = {Filippi, Sarah and Capp{\'e}, Olivier and Cl{\'e}rot, Fabrice and Moulines, Eric},
     booktitle = {Recent Advances in Reinforcement Learning: 8th European Workshop, EWRL 2008, Villeneuve d?Ascq, France, June 30-July 3, 2008, Revised and Selected Papers 8},
     pages = {69--81},
     year = {2008},
     organization = {Springer Berlin Heidelberg},
   }